PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0604s0001.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

C2H2

Protein Properties

Length: 320aa MW: 35888.5 Da PI: 7.308

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0604s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	266	288	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+ +F ++ + H+ +H Cagra.0604s0001.1.p 266 YTCPKCNCVFDTSQKFAAHMLSH 288 9*******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.995	266	293	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	268	288	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MNYANFFASP PSFSSYQNSH NSSTSFPFNF GSVSGAAYFP NNSIQYEIEH VNRAMDSNPN 60 TWIPVFLPPN ILSHHDIILN ATPISVVYPD QDPAAHYSVA PRYSVARHYA AARHYSVPPH 120 HFGSSNHLVN PHHSTAPHHF AAPHHSDAPH ISAAPYHSVI LHHSNPNTWT PVFVPPNVFG 180 NQHTLLNPTP ISVVYPDQDP LARYYSAAPH HSGTTHHLVA PDHFTAPNHF DAPHHSDTIS 240 VSSTEDDDES DDGRTHSIPC EKYGPYTCPK CNCVFDTSQK FAAHMLSHYK SETDEEKDRR 300 LRARNRKKYR KFMASLRRP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0604s0001.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006281471.2	1e-151	soluble scavenger receptor cysteine-rich domain-containing protein SSC5D
TrEMBL	R0GCH8	1e-175	R0GCH8_9BRAS; Uncharacterized protein
STRING	Cagra.0604s0001.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1924	19	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18490.1	1e-30	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Cagra.0604s0001.1.p