PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0612s0086.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

C2H2

Protein Properties

Length: 176aa MW: 19963.9 Da PI: 9.9087

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0612s0086.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.6e-05	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+++F + L H+r+H Cagra.0612s0086.1.p 93 HKCSICDQVFGTGQALGGHMRKH 115 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	2.0E-10	48	73	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.54E-6	48	115	No hit	No description
PROSITE profile	PS50157	9.764	49	76	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.74	49	71	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	51	71	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.6E-11	93	117	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.037	93	120	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0062	93	115	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	95	115	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MKRDRSDYEE SMQHVDIVRS LMMLSQSFVV KQIDVKQSTG SKNNHNNHFE CKTCNRIFDS 60 FQALGGHRAS HKKPKLSVDH EQVKHRKSEN DMHKCSICDQ VFGTGQALGG HMRKHRASML 120 TEQSAIPSVV FPRPVMNRCN SSKKILDLNL TPLENDLVTI FGKNMAPQID LKFVN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	86	KKPKLSVDHEQVKHRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0612s0086.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL132966	1e-169	AL132966.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12.
GenBank	CP002686	1e-169	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291929.1	1e-126	zinc finger protein ZAT11
Swissprot	Q9SLD4	4e-72	ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBL	R0FQJ5	1e-125	R0FQJ5_9BRAS; Uncharacterized protein
STRING	Cagra.0612s0086.1.p	1e-128	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM531	28	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53600.1	1e-116	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Cagra.0612s0086.1.p