PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0618s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 91aa    MW: 10252.8 Da    PI: 9.6237
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0618s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH291.8e-095881326
                         S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                          ++C++++r+G Ck G+rCk+ H+
  Cagra.0618s0003.1.p 58 KAICPHYSRFGLCKSGPRCKYDHS 81
                         689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0039936IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263937IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-61036IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-51435IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-75281IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-45582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5585583IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-75881IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-46082IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSDKNLPQRP DEPLCSYYQI TGNCNMKQNC QFHHPKNIKP IEPKLVLTDN GLPLRPNKAI  60
CPHYSRFGLC KSGPRCKYDH STRPSSSGPR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0618s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644725.11e-60zinc finger CCCH domain-containing protein 13
SwissprotQ3ECU81e-37C3H13_ARATH; Zinc finger CCCH domain-containing protein 13
TrEMBLR0GT252e-57R0GT25_9BRAS; Uncharacterized protein
STRINGCagra.0618s0003.1.p1e-60(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15633917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48195.15e-40C3H family protein