PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0666s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 184aa    MW: 20747.8 Da    PI: 9.7857
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0666s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00034971123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+k+Fs+   L  H  +H
  Cagra.0666s0001.1.p 49 FECKTCNKRFSSFQALGGHRASH 71
                         89**********99999998887 PP
2zf-C2H216.52.5e-0599121123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg+sF +   L  H+r+H
  Cagra.0666s0001.1.p  99 HECSICGQSFGTGQALGGHMRRH 121
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-43673IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.57E-848121No hitNo description
PfamPF139121.5E-124873IPR007087Zinc finger, C2H2
SMARTSM003550.0934971IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5334976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
SMARTSM003550.009799121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.15999126IPR007087Zinc finger, C2H2
PfamPF139128.2E-1299123IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MKRGRSDFEE SIKNLDIAKC LMILAQTSMA NQISLNQNQH TESHTSNRFE CKTCNKRFSS  60
FQALGGHRAS HKKPKLTTVD VEQKDVKHLS YNYKGNHSHE CSICGQSFGT GQALGGHMRR  120
HRSSIKVEPS FICPVIPTMP VLKRCSSSKR VLSLDLNLTP LENDLEYIFG KTFFPNIDMK  180
FVL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0666s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0058961e-174AC005896.3 Arabidopsis thaliana chromosome 2 clone F3G5 map ve018, complete sequence.
GenBankCP0026851e-174CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankX986721e-174X98672.1 A.thaliana mRNA for ZAT11 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295072.11e-134zinc finger protein ZAT11
SwissprotQ9SLD41e-112ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLR0HRP31e-133R0HRP3_9BRAS; Uncharacterized protein
STRINGCagra.0666s0001.1.p1e-135(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-115C2H2 family protein