PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0686s0084.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

WRKY

Protein Properties

Length: 273aa MW: 30139 Da PI: 4.9392

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0686s0084.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93	2.2e-29	72	130	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + itY +Hnh+ Cagra.0686s0084.1.p 72 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPSKLMITYACDHNHP 130 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-30	63	132	IPR003657	WRKY domain
PROSITE profile	PS50811	31.502	66	132	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-25	67	132	IPR003657	WRKY domain
SMART	SM00774	6.4E-34	71	131	IPR003657	WRKY domain
Pfam	PF03106	1.1E-24	73	130	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MHHRRAAIQE SDDEEDETYN DAVPESPSSC EDSKISKPTP KKSRRNVEKR VVSVPIADVE 60 GSKSRGEVYP PSDSWAWRKY GQKPIKGSPY PRGYYRCSSS KGCPARKQVE RSRVDPSKLM 120 ITYACDHNHP FPSSAANNKS HHRSSVVLKT AKKEEEYEEE EELTVAAVEE PPAGLDLSHV 180 DSPLLLGGCY SEVGEFGWFY DASISSSSGS SNFLDVTLER GFSEGGEEDD SLFGDLGDLP 240 DCASVFRRGT VATEDQHRRC DFGAIPFCDS SR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-20	49	133	6	80	Disease resistance protein RRS1
5w3x_D	2e-20	49	133	6	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0686s0084.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084233	0.0	AY084233.1 Arabidopsis thaliana clone 100465 mRNA, complete sequence.
GenBank	BT029470	0.0	BT029470.1 Arabidopsis thaliana At3g58710 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291660.1	0.0	probable WRKY transcription factor 69 isoform X1
Swissprot	Q93WV5	1e-175	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	R0HL08	0.0	R0HL08_9BRAS; Uncharacterized protein
STRING	Cagra.0686s0084.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12478	19	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.1	1e-168	WRKY DNA-binding protein 69

Link Out ? help Back to Top
Phytozome	Cagra.0686s0084.1.p

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]