PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0698s0022.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 194aa    MW: 21565.7 Da    PI: 7.501
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0698s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601253.7e-39171171100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+k+Cv+apyf aeq +++fa+vhk+FGasn +k+l +lp ++r da+ +l+yeA ar+rdPvyG+vg++++lq+q+++
  Cagra.0698s0022.1.p  17 PCGACKFLRRKCVKGCVFAPYFDAEQgTARFAAVHKVFGASNASKMLLRLPLHKRFDAVVTLCYEAMARLRDPVYGSVGHLFSLQHQVMN 106
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+aela+++++
  Cagra.0698s0022.1.p 107 LQAELAHVQAR 117
                          ******99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.10216118IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-3817115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MMTGNLNGGG RGGGEGPCGA CKFLRRKCVK GCVFAPYFDA EQGTARFAAV HKVFGASNAS  60
KMLLRLPLHK RFDAVVTLCY EAMARLRDPV YGSVGHLFSL QHQVMNLQAE LAHVQARLST  120
FQRFPLQSPQ QMQPPPYDLV HNNEYPMEQP SNLSSVWEEE HLLQDGTEEG EFQEMAMQYI  180
SRYLPAVKLP ACT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-36131157110LOB family transfactor Ramosa2.1
5ly0_B8e-36131157110LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0698s0022.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738560.0AB473856.1 Arabidopsis thaliana ASL23 mRNA for ASYMMETRIC LEAVES2-like 23 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296305.11e-143LOB domain-containing protein 19
SwissprotO221321e-114LBD19_ARATH; LOB domain-containing protein 19
TrEMBLR0HYN61e-141R0HYN6_9BRAS; Uncharacterized protein
STRINGCagra.0698s0022.1.p1e-143(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.11e-107LOB domain-containing protein 19