PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0701s0030.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CPP
Protein Properties Length: 436aa    MW: 48452.4 Da    PI: 8.4482
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0701s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.92.2e-1465103241
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          ++k+CnCk+skClk+YCeCfa+g++C+  C+C +C+N+ e
  Cagra.0701s0030.1.p  65 QQKHCNCKNSKCLKLYCECFASGSYCNG-CNCLNCHNNLE 103
                          79**************************.********976 PP
2TCR51.91.4e-16148187140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeC++a++ Cse+C+C+dCkN e
  Cagra.0701s0030.1.p 148 KHSKGCHCKKSGCLKKYCECYQANVLCSENCRCQDCKNFE 187
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.2E-1664104IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.68365188IPR005172CRC domain
PfamPF036383.8E-1166101IPR005172CRC domain
SMARTSM011145.3E-19148189IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12151186IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
FQKSLEPPPC SPVKSSQESA TEVTPPQKPP LHRFNHNQVQ KNQSGKYRVS KQSEFESVEN  60
TPNKQQKHCN CKNSKCLKLY CECFASGSYC NGCNCLNCHN NLENESSRQE AITAILERNP  120
DAFKPKIAGS PLGTKDLQEN VRQMLLGKHS KGCHCKKSGC LKKYCECYQA NVLCSENCRC  180
QDCKNFEGSE ERNALVHGPQ VSDSYIQQTT NAAVNRAIDM SGYLNPPDSR KRKSKDASHS  240
IAVSPVVRNQ MANRVIRYGD TSLFSLPNTK AVSGSTTCAY RSSLSNTIQP HHVRELCSLL  300
VSKSVDVAKK LSGAKCETDK GRKYDKDPSV APAQRHANEI NDSPDCVLDA NRMNEKPLSP  360
ATRALMCDEE HEMVSEKDTL TRVKTSQEKE DTNTSSEIYL EQEKQILSSF RDYLIQLSNR  420
GSLNGKNIKA NTNPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-34611976132Protein lin-54 homolog
5fd3_B7e-34611976132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228233SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0701s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054051e-103AC005405.1 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence.
GenBankCP0026881e-103CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287605.20.0protein tesmin/TSO1-like CXC 7
SwissprotF4JY840.0TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLR0HA940.0R0HA94_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0701s0030.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.10.0Tesmin/TSO1-like CXC domain-containing protein