PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0751s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 112aa    MW: 13048.1 Da    PI: 9.4229
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0751s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.95.7e-11692483
                         E-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3  4 vltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
                         +lt  d +++grl lp++ + +           ++  ++++++ ++d  + +s+ v+l  rk+++ y++++GWk+F k+ g k gD + ++
  Cagra.0751s0002.1.p  6 TLTDLDLSNQGRLGLPRRQILSVltkmegvtdkSL--KNGIQVEIMDvVNDNSYFVTL--RKSRKDYFFRSGWKNFTKSCGFKIGDEFNIY 92
                         67889999***********9999999988885433..36778888897888*******..**************************77665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.89E-102105No hitNo description
SuperFamilySSF1019364.32E-14395IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-93101IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-53106IPR003340B3 DNA binding domain
PfamPF023625.8E-8692IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MIISRTLTDL DLSNQGRLGL PRRQILSVLT KMEGVTDKSL KNGIQVEIMD VVNDNSYFVT  60
LRKSRKDYFF RSGWKNFTKS CGFKIGDEFN IYWDYLLSKF VILNFEYTLI E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0751s0002.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296022.12e-32putative B3 domain-containing protein At2g21920
TrEMBLR0F0A51e-54R0F0A5_9BRAS; Uncharacterized protein
STRINGCagra.0751s0002.1.p3e-75(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.15e-16B3 family protein