PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0796s0014.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 344aa    MW: 39570.9 Da    PI: 5.3553
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0796s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.81.7e-33141052102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+ye+++d++ ++++sws+n++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF ++ F +g+ 
  Cagra.0796s0014.1.p  14 FLTKTYEMVDDSSSDSVVSWSDNNKSFIVKNPAEFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEK---------WEFLNEDFVRGRP 94 
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                           l+++i+r+k 
  Cagra.0796s0014.1.p  95 YLMKNIHRRKP 105
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.8E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.9E-5810103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.8E-3611103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.8E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDENNGGSSS LPPFLTKTYE MVDDSSSDSV VSWSDNNKSF IVKNPAEFSR DLLPRFFKHK  60
NFSSFIRQLN TYGFRKVDPE KWEFLNEDFV RGRPYLMKNI HRRKPVHSHS LSNIQAQNPL  120
TESERRSMED QIERLKKEKE GLLVELQSQE QERKDFEMQV TTLKDRLQHM EQHQKSIVAY  180
VSQVLEKPGL SLNLENHERR KRRLPETPLP ASRSHIEQVE NLESSLTFWE NLVSESYEKS  240
GVQSSSMDLD AAESSLSMGD TRPKSSKIDM NLEPPVTITA AAPKTGVNDD FWEQCLTENP  300
GSTEQQEVQS ERKDVDNDNG NKIGNQRTFW WNSGNVNNIT EKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-22710322129Heat shock factor protein 1
5d5v_B3e-22710322129Heat shock factor protein 1
5d5v_D3e-22710322129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0796s0014.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2290580.0AK229058.1 Arabidopsis thaliana mRNA for heat shock transcription factor, complete cds, clone: RAFL16-34-M14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280755.10.0heat stress transcription factor A-4c isoform X1
RefseqXP_023633043.10.0heat stress transcription factor A-4c isoform X1
RefseqXP_023633050.10.0heat stress transcription factor A-4c isoform X1
SwissprotQ9FK720.0HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLR0GR490.0R0GR49_9BRAS; Uncharacterized protein
STRINGCagra.0796s0014.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.10.0HSF family protein
Publications ? help Back to Top
  1. Faragó D,Sass L,Valkai I,Andrási N,Szabados L
    PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.
    Front Plant Sci, 2018. 9: p. 219
    [PMID:29520290]