PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0799s0042.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 467aa    MW: 50470.1 Da    PI: 9.6304
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0799s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05210232223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           C+ Cg++F+  ++L+ H+ + H
  Cagra.0799s0042.1.p 210 ACSQCGEVFPKLESLELHQAVrH 232
                          6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280209232IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808209237IPR007087Zinc finger, C2H2
SuperFamilySSF563992.78E-20234462No hitNo description
Gene3DG3DSA:3.90.228.101.7E-14236462IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MALLTFLPEN AEPPQKHNPP STKRKKRENP TDQTQPQKQK PHKPQKPKKA VLPKQPSSWD  60
QIKNLLTCKQ IEGSRVHDPS KNSNQPGPSI TTNLSPSKLG SSCSSICSFR DVAHGNTRVV  120
HREDHSPDVA NSSTAPDSET RLLTRKPGQH GSSSSRSLTS GSTRSNASGS YTSSSTTSFR  180
AMQFRKLSGC YECHMIVDPS RYPITPRVCA CSQCGEVFPK LESLELHQAV RHAVSELGPE  240
DSGRNIVEII FKSSWLKKDS PICQIERILK VHNTQRTIQR FEDCRDAVKA RALQTTRKDA  300
RCAADGNELL RFHCTTLTCS LGARGSSSLC SNLPGCGVCT VIRHGFQGKG AAAATANAGG  360
VRTTASSGRA DDLLRCSDDA RRVMLVCRVI AGRVKRVDLP AGEAHATAEK KSPVENNSAV  420
GVASSGGVFD SVAVNAGVYS NLEELVVYNP RAILPCFVVI YKVLES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0799s0042.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529750.0AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428604.10.0PREDICTED: uncharacterized protein LOC104713223
TrEMBLR0HU070.0R0HU07_9BRAS; Uncharacterized protein
STRINGCagra.0799s0042.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.10.0C2H2-like zinc finger protein