PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0802s0008.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

GeBP

Protein Properties

Length: 245aa MW: 28339.4 Da PI: 9.8797

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0802s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	54.5	3.4e-17	42	125	7	93
DUF573 7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 w+e+ +i++LqGl+df++ ++k+++dd+ + yef+k+ i f+ ++++veK+ +LK+K +++k +e s s+ dqk +l Cagra.0802s0008.1.p 42 WNEKAQISMLQGLMDFEDVKKKNAFDDMLETYEFLKDYIVFESYSQEFVEKMMSLKEKLMYHKRK---REERSSSERYDQKGSKLMT 125 ************************************************************99999...7788889999999888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	6.5E-9	41	123	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MGKVNTNESK EKSKGTLLVN KDVNAKRSNK VGKKVCSETL KWNEKAQISM LQGLMDFEDV 60 KKKNAFDDML ETYEFLKDYI VFESYSQEFV EKMMSLKEKL MYHKRKREER SSSERYDQKG 120 SKLMTLVRED DVEHVVEKPK KSKGIAKPKE EKQEAVMIRE REKWFEDASL VREIVSRGGV 180 DEDTLKSKWD AVPVEKKSQM DQKWSVLRAK ENESLSQKSK FLKELVSIFR GASSSSSSSS 240 SLFM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0802s0008.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006299987.1	1e-157	probable transcription factor At4g00232
TrEMBL	R0I4G6	1e-155	R0I4G6_9BRAS; Uncharacterized protein
STRING	Cagra.0802s0008.1.p	1e-174	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16691	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01370.1	6e-18	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Cagra.0802s0008.1.p