PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0805s0019.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 275aa    MW: 29436.3 Da    PI: 8.7256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0805s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000776887221
                         EETTTTEEESSHHHHHHHHH CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                         +C+ Cgk F +   L  H+r
  Cagra.0805s0019.1.p 68 PCTECGKQFGSLKALFGHMR 87
                         5******************8 PP
2zf-C2H210.90.0014147169123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k+F ++  L  H  tH
  Cagra.0805s0019.1.p 147 FECGGCKKVFGSHQALGGHRATH 169
                          89**************9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.9E-106791IPR007087Zinc finger, C2H2
SMARTSM003550.0176789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0766794IPR007087Zinc finger, C2H2
SuperFamilySSF576673.88E-86889No hitNo description
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-46989IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.88E-8142169No hitNo description
PfamPF139126.3E-7146170IPR007087Zinc finger, C2H2
PROSITE profilePS501579.556147174IPR007087Zinc finger, C2H2
SMARTSM003552.4147169IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280149171IPR007087Zinc finger, C2H2
PROSITE profilePS501579.245215242IPR007087Zinc finger, C2H2
PfamPF139121.1E-11215239IPR007087Zinc finger, C2H2
SMARTSM003550.13215237IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MANTSNSDPS FDIPFASSNV TLPSYSQNPR RKRTKLTNNE TGSSSSPARP KPVKKPLDPN  60
APPQIARPCT ECGKQFGSLK ALFGHMRCHP ERQWRGIIPP PDHKRVSNAT AASSSLNLVS  120
EEEIASYLLL LANGAVTTGT SGVEGRFECG GCKKVFGSHQ ALGGHRATHK HVKGCFAITN  180
STEDPSPPPP PPPPPQEIVD QDKGKSIKLV SGMIHRCNIC FRVFSSGQAL GGHMRCHWEK  240
DQEENQVSAI DLNVPAATSP DTSIGCSLDL RLGL*
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00621PBMTransfer from AT2G17180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0805s0019.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299883.10.0zinc finger protein ZAT2
SwissprotQ9SIJ01e-139ZAT2_ARATH; Zinc finger protein ZAT2
TrEMBLR0GB190.0R0GB19_9BRAS; Uncharacterized protein
STRINGCagra.0805s0019.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-141C2H2-like zinc finger protein