PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0807s0009.4.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 350aa    MW: 38651.6 Da    PI: 6.4939
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0807s0009.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.41.1e-134871326
                         S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                          e C+f++rtG Ck+G++CkF+H+
  Cagra.0807s0009.4.p 48 AEDCSFYMRTGSCKFGSSCKFNHP 71
                         689********************9 PP
2zf-CCCH25.42.4e-087795725
                         SGGGGTS--TTTTT-SS-S CS
              zf-CCCH  7 rffartGtCkyGdrCkFaH 25
                         ++++rtG CkyG++C+F+H
  Cagra.0807s0009.4.p 77 QYYFRTGGCKYGESCRFNH 95
                         59***************** PP
3zf-CCCH40.45e-13119142326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          +++C++++r+G Ck+G+ CkF+H+
  Cagra.0807s0009.4.p 119 EVECPYYMRNGSCKFGAECKFNHP 142
                          789********************9 PP
4zf-CCCH17.95.7e-06249274227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++ +tG Ck+  +Ck++H++
  Cagra.0807s0009.4.p 249 DQPECSYYIKTGDCKFKFNCKYHHPK 274
                          689*********************96 PP
5zf-CCCH33.47.9e-11296319326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          + +C +++r+G+Ck+G+ C+F H+
  Cagra.0807s0009.4.p 296 QNICTHYSRYGICKFGPACRFDHS 319
                          679********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.4324573IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-64573IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-74572IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-114871IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-55170IPR000571Zinc finger, CCCH-type
SMARTSM003560.297397IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-67795IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-47897IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.467998IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887116144IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-7116143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5119143IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-11119142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4122141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.718247275IPR000571Zinc finger, CCCH-type
SMARTSM003561247274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5251277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6291319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502293321IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4293320IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-8296319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4298320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
GLDSNAVVTN QEQEEDGDGY GCVYGDGDGW SENESEENEA VYPVRPGAED CSFYMRTGSC  60
KFGSSCKFNH PLSRKIQYYF RTGGCKYGES CRFNHTKSKS CLASVPELNF LGLPIRLGEV  120
ECPYYMRNGS CKFGAECKFN HPDPTTIGGT DSPSFHSNNG VSAGSFSPKS TFQASSASWS  180
SPRHANGSTP FIPVMLSQTH GVPSQTPEWN GYQASVYSSE RGVFSSSNIS MLSQYHHQMP  240
AEEFPERPDQ PECSYYIKTG DCKFKFNCKY HHPKNRLPKL PPYALNDKGL PLRPDQNICT  300
HYSRYGICKF GPACRFDHSA QLPYPTGNSQ TIVEPPQVGA NGDEVDGWN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0807s0009.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0331391e-152BT033139.1 Arabidopsis thaliana unknown protein (At3g48440) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638334.10.0zinc finger CCCH domain-containing protein 43 isoform X3
SwissprotQ9STM40.0C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLR0FPN00.0R0FPN0_9BRAS; Uncharacterized protein
STRINGXP_006291144.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]