PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0824s0026.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

LBD

Protein Properties

Length: 168aa MW: 18629.4 Da PI: 8.4824

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0824s0026.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.3	1.3e-43	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +Ca+Ck+lrrkC+kdCv+apyfp ++p kfa+vhk+FGasnv k+l++l e++r+da++s+vyeA+ar++dPvyG+vg+i++l++qle l Cagra.0824s0026.1.p 14 PCAGCKLLRRKCVKDCVFAPYFPPKEPYKFAIVHKIFGASNVNKMLQELAENQRSDAVNSMVYEANARVQDPVYGCVGTISSLHRQLEAL 103 7*************************************************************************************** PP DUF260 91 kaelallkee 100 +++la +++e Cagra.0824s0026.1.p 104 QTQLAFAQAE 113 ***99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.266	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-42	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MRQKGHRHGR TVSPCAGCKL LRRKCVKDCV FAPYFPPKEP YKFAIVHKIF GASNVNKMLQ 60 ELAENQRSDA VNSMVYEANA RVQDPVYGCV GTISSLHRQL EALQTQLAFA QAELIHIRST 120 LCRIDNDTKP PPYTASTVAF PTIKDFSSDV DMAFVYEVGA GDSLWSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-45	13	115	10	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-45	13	115	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0824s0026.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin. {ECO:0000269\|PubMed:17485849}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006303462.2	1e-125	LOB domain-containing protein 3
Swissprot	Q9SA51	1e-102	LBD3_ARATH; LOB domain-containing protein 3
TrEMBL	D7KEG5	1e-105	D7KEG5_ARALL; Predicted protein
STRING	Cagra.0824s0026.1.p	1e-124	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16530.1	1e-104	ASYMMETRIC LEAVES 2-like 9

Link Out ? help Back to Top
Phytozome	Cagra.0824s0026.1.p

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]