PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0824s0035.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 141aa    MW: 16331.2 Da    PI: 4.1098
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0824s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-181099198
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                         f kv+++    +s+ + +p  f  e+     + ++t+ l d sgrsW+v++  +k ++ ++lt GW++Fvk+n+L++g  + F +d +++f 
  Cagra.0824s0035.1.p 10 FMKVFIS--QKSSKSFAIPLGFN-EYfPD--PLPITVDLLDYSGRSWTVRM--KKIGENVFLTLGWENFVKDNNLEDGKYLNFIYDCDRTF- 93
                         7788844..4455558******8.66243..499*****************..*******************************9987776. PP

                         .EEEEE- CS
                   B3 92 lvvkvfr 98
                          +v +f 
  Cagra.0824s0035.1.p 94 -YVIIFG 99
                         .888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.82E-236103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-207103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.178101IPR003340B3 DNA binding domain
PfamPF023628.2E-171098IPR003340B3 DNA binding domain
SMARTSM010199.2E-1910101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MAGTSSEVRF MKVFISQKSS KSFAIPLGFN EYFPDPLPIT VDLLDYSGRS WTVRMKKIGE  60
NVFLTLGWEN FVKDNNLEDG KYLNFIYDCD RTFYVIIFGH DMCSEFRGFP QVIVDVDDYE  120
TCEDEDEDVE EAQQQKENNK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-5751036104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0824s0035.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023632724.11e-100B3 domain-containing protein At1g16640
SwissprotQ9FX771e-64Y1664_ARATH; B3 domain-containing protein At1g16640
TrEMBLR0GU122e-81R0GU12_9BRAS; Uncharacterized protein
STRINGCagra.0824s0035.1.p1e-100(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157511416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.11e-65B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]