PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0846s0014.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NAC

Protein Properties

Length: 239aa MW: 26727 Da PI: 6.1492

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0846s0014.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.7	6.2e-42	6	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 + GfrF Pt++elv +yL++++eg++ +++++vi+ +d+++veP++Lp+ ++++++++w+fF++r++++a+g r++r+t sgyWkat Cagra.0846s0014.1.p 6 TIGFRFYPTEDELVAFYLRNQLEGRSdVSVHRVIPVLDVFDVEPSHLPNiageRCRGDTEQWFFFVPRQEREARGGRPSRTTGSGYWKAT 95 57********************997788889***********656666666888************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ +v+s +++ +g+kkt+vfy+g+ap+g+kt+W m+ey++ Cagra.0846s0014.1.p 96 GSPGPVFSVDNRMIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 137 **************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	46.045	5	162	IPR003441	NAC domain
SuperFamily	SSF101941	3.4E-46	5	161	IPR003441	NAC domain
Pfam	PF02365	1.2E-22	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MADEVTIGFR FYPTEDELVA FYLRNQLEGR SDVSVHRVIP VLDVFDVEPS HLPNIAGERC 60 RGDTEQWFFF VPRQEREARG GRPSRTTGSG YWKATGSPGP VFSVDNRMIG VKKTMVFYTG 120 KAPTGRKTKW KMNEYKAVDE TVNSTTIPKL RHEFSLCRVY ITTGSSRAFD RRPSVGVLQT 180 ERMPTSDVAV AGTSSFRVEG SPETSISGGE HVDLSTNIDF VEGGLTESIW EWEPLSWS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-32	8	167	23	173	NAC domain-containing protein 19
3swm_B	4e-32	8	167	23	173	NAC domain-containing protein 19
3swm_C	4e-32	8	167	23	173	NAC domain-containing protein 19
3swm_D	4e-32	8	167	23	173	NAC domain-containing protein 19
3swp_A	4e-32	8	167	23	173	NAC domain-containing protein 19
3swp_B	4e-32	8	167	23	173	NAC domain-containing protein 19
3swp_C	4e-32	8	167	23	173	NAC domain-containing protein 19
3swp_D	4e-32	8	167	23	173	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0846s0014.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175806	0.0	AK175806.1 Arabidopsis thaliana mRNA for NAC-domain protein-like, complete cds, clone: RAFL22-40-G20.
GenBank	AY086944	0.0	AY086944.1 Arabidopsis thaliana clone 29829 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006288518.2	1e-175	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-146	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	R0FHF5	1e-174	R0FHF5_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.0846s0014.1.p	1e-175	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-137	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Cagra.0846s0014.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]