PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0882s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 275aa    MW: 30081.9 Da    PI: 8.5635
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0882s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-18109163256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ ++tkeq  +Le+ F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Cagra.0882s0002.1.p 109 RKKLRLTKEQSSRLEDSFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 163
                          788899***********************************************98 PP
2HD-ZIP_I/II122.91.5e-39109197190
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+keq++ LE+sF+++++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en rL+ke +eL+ +
  Cagra.0882s0002.1.p 109 RKKLRLTKEQSSRLEDSFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEILKKCCETLTDENMRLRKEIQELK-T 197
                          69*************************************************************************************9.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.086105165IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-17106168IPR009057Homeodomain-like
SMARTSM003891.3E-15107169IPR001356Homeobox domain
SuperFamilySSF466893.64E-18107173IPR009057Homeodomain-like
CDDcd000861.19E-16109166No hitNo description
PfamPF000461.1E-15109163IPR001356Homeobox domain
PROSITE patternPS000270140163IPR017970Homeobox, conserved site
PfamPF021833.2E-10165197IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.0E-21165211IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSYDDSCNSG LVLGLGLSPT PNNYNAIKRS SGYKLEPSLT LSLSGDPLLT LVAGADQLCR  60
QTSSLSGVSS FSSGRVVKRE RYGGEESPEE EEETTKRVIS EDEEGVSARK KLRLTKEQSS  120
RLEDSFKHHS TLNPKQKQVL ARQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEILKKCCET  180
LTDENMRLRK EIQELKTLSL TNHHQPFYMH MSTNPTLTIC PSCEIIIAGG GNGGGGGGSV  240
ANTVVVDGGK AKGAFSISSK PHFFNPYTNP SAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157165RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0882s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294654.21e-173homeobox-leucine zipper protein HAT9
SwissprotP466031e-130HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLR0FX481e-171R0FX48_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0882s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-131HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]