PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0891s0022.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Protein Properties

Length: 299aa MW: 34428.8 Da PI: 8.8354

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0891s0022.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.5	2.5e-18	157	246	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v + +l lp f+ ++ ++ e+++++lede+g+++e + +k+ + l++GWk+F+ +++L++gD ++F+l++ ++f Cagra.0891s0022.1.p 157 FVKSMLRSHVYSCFWLGLPSGFCVDNFSE--ETIEVVLEDEEGEEYEAVY--IGKRTG--LSGGWKRFALDHKLDDGDALLFELVEPKRF 240 89**********************866..6789***********..555544..*********************9987777 PP ..EEEEE- CS B3 91 elvvkvfr 98 ++ vfr Cagra.0891s0022.1.p 241 --KIYVFR 246 ..888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	7.06E-23	150	248	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.1E-20	150	247	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.02E-18	155	246	No hit	No description
SMART	SM01019	1.1E-25	157	248	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.098	157	248	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.9E-17	157	247	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MAYEEARKLR LQENLKRFQV FPFHRCLVFF FSSFSDSFLT IESQDLGISQ ISKALLTQIP 60 KKTLQRNPRP IDKALFATAE PRRSSRVRTP ISSYRDDVDV DTGPTLNLRR SRRNSSWDSY 120 IARPKHECKF ASYEEKVGAL KAAEEFQSRL ESPHPSFVKS MLRSHVYSCF WLGLPSGFCV 180 DNFSEETIEV VLEDEEGEEY EAVYIGKRTG LSGGWKRFAL DHKLDDGDAL LFELVEPKRF 240 KIYVFRGNES ANLTSKEKRV RARQSEEEDK DVEESGDEGD SSRATKRLSS RLLRKRKA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0891s0022.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB019228	2e-71	AB019228.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCK7.
GenBank	CP002688	2e-71	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023638476.1	0.0	putative B3 domain-containing protein At5g58280 isoform X2
Swissprot	Q9FHB2	1e-125	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	R0GRK8	0.0	R0GRK8_9BRAS; Uncharacterized protein
STRING	Cagra.0891s0022.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16141	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	1e-105	B3 family protein

Link Out ? help Back to Top
Phytozome	Cagra.0891s0022.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]