PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0906s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 150aa    MW: 17620.2 Da    PI: 9.9539
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0906s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.84.4e-23121323128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka...eekewyfFskrdkkyatgk...rknra....tksg 81 
                          +GfrFhP+d+el+ +yL++kv++k+++              Pw+L  +k  +   e ++wy+F+++d+ +++ +   r++r+    t +g
  Cagra.0906s0001.1.p  12 VGFRFHPRDQELIRYYLEPKVAKKPNKY-------------PWRLThTK--TdlfEPNQWYYFVTHDQVSENVTgklRNSRKvkgeTCEG 86 
                          7************************777.............88887222..2234677*********999854422355554445577** PP

                  NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           Wka  k ++v+sk ++e++g k+tL fy   + +++++ W+m ey l
  Cagra.0906s0001.1.p  87 CWKAPKKLRDVVSKdTREVIGKKRTLSFYV--KGESKSSGWTMTEYYL 132
                          *************967788**********4..3344589*******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-298146IPR003441NAC domain
PROSITE profilePS5100524.4410149IPR003441NAC domain
PfamPF023656.4E-2112131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MSMVEKYNEK EVGFRFHPRD QELIRYYLEP KVAKKPNKYP WRLTHTKTDL FEPNQWYYFV  60
THDQVSENVT GKLRNSRKVK GETCEGCWKA PKKLRDVVSK DTREVIGKKR TLSFYVKGES  120
KSSGWTMTEY YLLDGGSFQN QVLCHLKGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0906s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023636995.11e-103putative NAC domain-containing protein 94
TrEMBLR0HBL01e-101R0HBL0_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0906s0001.1.p1e-108(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.14e-39NAC domain containing protein 88