PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0909s0019.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 266aa    MW: 30000.3 Da    PI: 7.2764
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0909s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08160207455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR +iN+++  L++++P +     k +  a++L + ++Y++sLq
  Cagra.0909s0019.1.p 160 SHSLAERVRRGKINERLRCLQDMVPGC----YKAMGMATMLDEIINYVQSLQ 207
                          8*************************8....355999*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.32E-10154211No hitNo description
SuperFamilySSF474591.7E-16154224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16156217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.364156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-6160207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-9162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MANFENLSSE FQTIAMDIYS SITQAADLNN NNNSNLHNFQ TFHPSSTSLE SLFLHHHHQQ  60
QQQLLHIHGN SPDNSNNVSP TSSFIHSDDH SNVDETKKRK ALLHSLSSSE NSTGVSHIIN  120
TAETGTLRRG KRLKKKKEEE EGKEREVVHV RARRGQATDS HSLAERVRRG KINERLRCLQ  180
DMVPGCYKAM GMATMLDEII NYVQSLQNQV EFLSMKLTAA SSFYDFNSET DAVDSMQRAK  240
ARETVEMGRQ TRDGSPVFHL STWSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131137RLKKKKE
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0909s0019.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172690.0AK117269.1 Arabidopsis thaliana At1g18400 mRNA for putative bHLH transcription factor (bHLH044), complete cds, clone: RAFL16-82-F22.
GenBankAY1382530.0AY138253.1 Arabidopsis thaliana putative bHLH transcription factor (BEE1) mRNA, complete cds.
GenBankBT0052680.0BT005268.1 Arabidopsis thaliana At1g18400 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305468.21e-156transcription factor BEE 1
SwissprotQ8GZ131e-131BEE1_ARATH; Transcription factor BEE 1
TrEMBLR0GRE81e-154R0GRE8_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0909s0019.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-124BR enhanced expression 1
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]