PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0914s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 241aa    MW: 27842 Da    PI: 5.1094
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0914s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.46.3e-35371292103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+y+++ed++++e+isw+e+g+ fvv+++ efa+++Lp+ Fkh nf+SFvRQLn+YgF+kv++ +         weF ++ F+kgk+
  Cagra.0914s0008.1.p  37 FLVKTYKVVEDPTTDEVISWNEDGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIR---------WEFCNEMFQKGKR 117
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          el+++i+r+ks+
  Cagra.0914s0008.1.p 118 ELMSNIRRRKSQ 129
                          *********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.45E-3233126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.7E-5633126IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-3634126IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-3037126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-183760IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-187587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-1888100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEDAGDHLRC NDEERLPLAF MVGTSTSTAE LQPPPPFLVK TYKVVEDPTT DEVISWNEDG  60
TGFVVWQPAE FARDLLPTLF KHCNFSSFVR QLNTYGFRKV TTIRWEFCNE MFQKGKRELM  120
SNIRRRKSQH WSNNKSHHQV VPTTSTVKQE DHQRLGIDHH HEDQRSSSTS SSCVYTALLD  180
ENKCLKHENE LLSSELGKTK NKCKQLMELV EKYRGEDEDE TDENDDEEDD GLKLFGVKLE  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-213512618120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0914s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0294520.0BT029452.1 Arabidopsis thaliana At2g41690 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640748.11e-179heat stress transcription factor B-3
SwissprotO222301e-148HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLR0FXE81e-177R0FXE8_9BRAS; Uncharacterized protein
STRINGCagra.0914s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-145heat shock transcription factor B3