PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0917s0076.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family EIL
Protein Properties Length: 560aa    MW: 64002.8 Da    PI: 4.5924
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0917s0076.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3452.43.6e-138394451353
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.....XXXXXXX............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaa....tgakksn............ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvY 74 
                          ++lkkrmwkd++l+++lk++k+++ ++  ++    t+                 ++ e++rrkkm+r+QD++LkYM+k+mevc+aqGfvY
  Cagra.0917s0076.1.p  39 DDLKKRMWKDRNLMCKLKQQKRDNHNSVISSpsssTS----AsssssssssaivRRAEASRRKKMARSQDSVLKYMMKIMEVCKAQGFVY 124
                          79********************987554443334333....1445588999*************************************** PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS CS
                 EIN3  75 giipekgkpvegasdsLraWWkekvefdrngpaaisky...qaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrr 161
                          gi+pekgkpv+g+sdsLr+WWke+v+fd+++p+a+s+y   +a++li+s+es +   ++s+ h+l+elqDTtlgSLLsalmqhc ppqrr
  Cagra.0917s0076.1.p 125 GIVPEKGKPVTGSSDSLRRWWKENVQFDQTAPNAVSDYltlAAAQLISSNESLD---PNSYIHMLHELQDTTLGSLLSALMQHCVPPQRR 211
                          ****************************************999****9988877...99******************************* PP

                          --TTT--HHHH---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHH CS
                 EIN3 162 fplekgvepPWWPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvl 250
                          fplekg++pPWWP+G+elwwge+g ++ ++g+ppy+kphdl+kawkvsvL+avikhmsp++e++r+l+rqsk+lqdkm+ake++++++vl
  Cagra.0917s0076.1.p 212 FPLEKGLAPPWWPNGTELWWGEQGaAAFEHGPPPYRKPHDLRKAWKVSVLAAVIKHMSPNLERVRRLARQSKCLQDKMMAKETDTWSRVL 301
                          ************************9999999*********************************************************** PP

                          TTTTT-S--XXXX..XXXXXXXXXXXXXXXXXXXXXX......XXXXXX.XXXXXXXXXX.............................. CS
                 EIN3 251 nqeekecatvsah..ssslrkqspkvtlsceqkedve......gkkeskikhvqavktta.............................. 302
                          nqee+ +++++ +    +  +q+p+ + s +q+   +      +++e    +++++k+ +                              
  Cagra.0917s0076.1.p 302 NQEEARLNRLKISdgEDEDPDQEPARFTSFDQESSLNtcflvaQDQELA-GSMRKDKRVDqessqddcflavqdqerrkekradqewspn 390
                          **********999542233447777777777776666799984444444.56777777778888999999******************** PP

                          ......XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS
                 EIN3 303 ......gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353
                                ++p+ +krk +++e++++ sk  ++tcq+ ++++s+++l+f dkn ++ +e
  Cagra.0917s0076.1.p 391 acflvdQEPFGNKRKGEFVEQEAMLSK--VYTCQNVSCPSSDVSLGFVDKNLRTGHE 445
                          *************************99..7************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.2E-12439305No hitNo description
Gene3DG3DSA:1.10.3180.101.2E-67181312IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.09E-58183308IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MVEVQDLEPL SPIQDEDDDD FVEEGEDEFD RFGEDISYDD LKKRMWKDRN LMCKLKQQKR  60
DNHNSVISSP SSSTSASSSS SSSSSAIVRR AEASRRKKMA RSQDSVLKYM MKIMEVCKAQ  120
GFVYGIVPEK GKPVTGSSDS LRRWWKENVQ FDQTAPNAVS DYLTLAAAQL ISSNESLDPN  180
SYIHMLHELQ DTTLGSLLSA LMQHCVPPQR RFPLEKGLAP PWWPNGTELW WGEQGAAAFE  240
HGPPPYRKPH DLRKAWKVSV LAAVIKHMSP NLERVRRLAR QSKCLQDKMM AKETDTWSRV  300
LNQEEARLNR LKISDGEDED PDQEPARFTS FDQESSLNTC FLVAQDQELA GSMRKDKRVD  360
QESSQDDCFL AVQDQERRKE KRADQEWSPN ACFLVDQEPF GNKRKGEFVE QEAMLSKVYT  420
CQNVSCPSSD VSLGFVDKNL RTGHEIECLY GNQEPMNHSS GGSDGFVRSM TTSDDDYSAS  480
SRAEDTREYH YQDGNWLDYL WFERLHDLNC SDQGFEDHTN TVDLNQLPDH SDSNQTMNEE  540
VFSLWDMGCE DKDIYMSQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-561813111130Protein ETHYLENE INSENSITIVE 3
4zds_B1e-561813111130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0917s0076.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133950.0AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281975.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ50.0EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLR0GUK90.0R0GUK9_9BRAS; Uncharacterized protein
STRINGCagra.0917s0076.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]