PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0925s0069.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 321aa    MW: 36807.2 Da    PI: 5.7046
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0925s0069.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.17.2e-36521792128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          ppG++F P+deel+++yLk+  +g+k++l +v i+ v+iy+++P++L +k+++ +ekew+f s+r k+ + g++++r  + gyW++t   
  Cagra.0925s0069.1.p  52 PPGYKFVPNDEELLCHYLKPFSQGDKCSLLSVpIHYVNIYESNPQQLSEKYEKgNEKEWFFISERTKTGKGGRNTKRGSNGGYWNSTVAA 141
                          9****************************9999**************95555426779999999999988899999999*********** PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          k++++ ++  +g k  L +y g++pkg+k dW+mhey +
  Cagra.0925s0069.1.p 142 KKIYA-GNGMIGYKSALEYYVGKKPKGVKGDWLMHEYWF 179
                          *****.9999***************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-4345201IPR003441NAC domain
PROSITE profilePS5100540.48251201IPR003441NAC domain
PfamPF023653.1E-1852177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MTILPPRNKR KASCSPERQT QPPETPHNPD VPSSSAADNF FPPPSTQQFV FPPGYKFVPN  60
DEELLCHYLK PFSQGDKCSL LSVPIHYVNI YESNPQQLSE KYEKGNEKEW FFISERTKTG  120
KGGRNTKRGS NGGYWNSTVA AKKIYAGNGM IGYKSALEYY VGKKPKGVKG DWLMHEYWFE  180
SCSDVRNDKK VDHALCKIYL SPKAAKKRKA EEEENEKLKK EEVVFIQEVE QLDLHQQGQS  240
QSHDMVCCDL KAQDQKSLPQ QLPFPYNLDD FSEFISFEQQ PVIKDFEDFW TDFIKSYTLL  300
DGDEESNNTS LFLNASSQYE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-254820717174NAC domain-containing protein 19
3swm_B7e-254820717174NAC domain-containing protein 19
3swm_C7e-254820717174NAC domain-containing protein 19
3swm_D7e-254820717174NAC domain-containing protein 19
3swp_A7e-254820717174NAC domain-containing protein 19
3swp_B7e-254820717174NAC domain-containing protein 19
3swp_C7e-254820717174NAC domain-containing protein 19
3swp_D7e-254820717174NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0925s0069.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431409.11e-147PREDICTED: NAC transcription factor 29-like
TrEMBLD7LVH11e-131D7LVH1_ARALL; Uncharacterized protein
STRINGCagra.0925s0069.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.11e-101NAC domain containing protein 64