PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0925s0070.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 127aa    MW: 14764.5 Da    PI: 5.2717
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0925s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.72.2e-1081051113
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lp GfrF+P+d e+ +++Lk+k+ g + ++ + i+e + + +     p     +e++wy+F++++ ++      +r   +++W    +++
  Cagra.0925s0070.1.p   8 LPSGFRFRPSDCEMANYFLKNKALGLPKKA-RSIPEQECHGY-----P-----GEEHWYYFCRKRDTQ-----VTRN-PHSIWTPIEQET 80 
                          699************************988.66887665544.....5.....6789*****997754.....4564.4589******** PP

                  NAM  91 evlsk..kgelvglkktLvfykgra 113
                          +vl+   +++l g  + +++ ++++
  Cagra.0925s0070.1.p  81 DVLDPknNDALLGFSRRFTLVDKKE 105
                          *999844455577777777775554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-146106IPR003441NAC domain
PROSITE profilePS5100510.4688126IPR003441NAC domain
PfamPF023651.8E-99101IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MEPTYRDLPS GFRFRPSDCE MANYFLKNKA LGLPKKARSI PEQECHGYPG EEHWYYFCRK  60
RDTQVTRNPH SIWTPIEQET DVLDPKNNDA LLGFSRRFTL VDKKEESDDS CLSDDEEAPK  120
YHMIGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0925s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431404.11e-61PREDICTED: NAC domain-containing protein 79
TrEMBLA0A178VFA95e-57A0A178VFA9_ARATH; Uncharacterized protein
STRINGCagra.0925s0070.1.p2e-91(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.14e-52NAC family protein