PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0926s0026.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 74aa    MW: 8471.62 Da    PI: 4.214
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0926s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS60.53.5e-19673309374
                 GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                          +e++e+Wr  +e+aGF+pv+ s++a++qaklll +++ s  y++ e++  ++ l W++ pL++vS+Wr
  Cagra.0926s0026.1.p   6 MEEKEQWRVLMEKAGFEPVEPSNYAVSQAKLLLWNYNySTLYSLVESEPGFIsLAWNNVPLLTVSSWR 73 
                          7999*********************************9999*****9999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.313151IPR005202Transcription factor GRAS
PfamPF035141.2E-16673IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MDNGLMEEKE QWRVLMEKAG FEPVEPSNYA VSQAKLLLWN YNYSTLYSLV ESEPGFISLA  60
WNNVPLLTVS SWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-20673308375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (Probable). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q53K16, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0926s0026.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0363044e-85AF036304.1 Arabidopsis thaliana scarecrow-like 7 (SCL7) mRNA, partial cds.
GenBankAK2292524e-85AK229252.1 Arabidopsis thaliana mRNA for scarecrow-like 7, complete cds, clone: RAFL16-53-M18.
GenBankAL1329794e-85AL132979.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T3A5.
GenBankCP0026864e-85CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290913.11e-43scarecrow-like protein 7
SwissprotQ9SCR08e-42SCL7_ARATH; Scarecrow-like protein 7
TrEMBLR0FP173e-42R0FP17_9BRAS; Uncharacterized protein
STRINGCagra.0926s0026.1.p5e-46(Capsella grandiflora)
STRINGXP_006290913.15e-43(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.13e-44GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]