PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0993s0051.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 261aa    MW: 28423.6 Da    PI: 8.8207
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0993s0051.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.71.9e-13152177126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt++C+ +  tG+C++G +C+FaHg
  Cagra.0993s0051.1.p 152 WKTRICNKWEITGYCPFGTNCHFAHG 177
                          8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.6E-1169105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-570103IPR000571Zinc finger, CCCH-type
SMARTSM003560.0287198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.9157199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-17146181IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-10148182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.216151179IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-8151178IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10152177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MSHRRDSRGD AVHVRFTDDT PPENRFPNPG DNSVWATEDE YNRVFAINPD DAELPSKKTR  60
TSSSTGIGKS FFKTKLCFKS RAGTCPLAAS SCHFAHSSEE LRRPPPLPNR QETATEASRN  120
RESFAMSFGP RGYGGAASDG GNVAQTLKPP NWKTRICNKW EITGYCPFGT NCHFAHGASE  180
LHNFGGGLVG GEGKIGTSIT PDINQTGQVD TVANLISPGV PPQRTSSAVM QKPNGVRTQR  240
KWKGPDKISR IYGDWIDEIE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0993s0051.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294826.10.0zinc finger CCCH domain-containing protein 28
RefseqXP_023639480.10.0zinc finger CCCH domain-containing protein 28
SwissprotQ5PP651e-132C3H28_ARATH; Zinc finger CCCH domain-containing protein 28
TrEMBLR0HDV00.0R0HDV0_9BRAS; Uncharacterized protein
STRINGCagra.0993s0051.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.11e-120C3H family protein