PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0993s0065.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family BBR-BPC
Protein Properties Length: 230aa    MW: 25084.7 Da    PI: 10.5714
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0993s0065.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind268.92.7e-823122997301
            GAGA_bind  97 vgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader 186
                          +++ ++++t+ +d +q    +q ++    +  ++ l+++ +++ ++ ++ +++k+++q+ +k++++k+ +kk+  ++s k++k++s  ++
  Cagra.0993s0065.1.p  31 HSYIAVPNTTGVDLSQV---SQASPVESMMVPQSRLSHPITVDYRNGVESVEQKSTNQSLSKALKPKTPRKKR--ATSDKSKKTPSI-PE 114
                          45788999999998888...44444444455677777777777888888888888888888888887777777..556667778886.69 PP

            GAGA_bind 187 skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG 276
                          +k+ekk++d++++  s+D+s++P+PvCsCtG++r+CYkWG+GGWqS+CCt++iS+yPLP+st+r+gaR+agrKmS+ga+ klL +La+eG
  Cagra.0993s0065.1.p 115 TKREKKNLDINIDISSFDTSGVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGARLAGRKMSNGAYVKLLVRLAGEG 204
                          9***************************************************************************************** PP

            GAGA_bind 277 ydlsnpvDLkdhWAkHGtnkfvtir 301
                          y+ls+pvDLk+hWA+HGtnkfvti+
  Cagra.0993s0065.1.p 205 YNLSHPVDLKNHWARHGTNKFVTIK 229
                          ************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012267.4E-1001229IPR010409GAGA-binding transcriptional activator
PfamPF062174.9E-7071229IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MNSFPSQNLM LSAPKANKDA GLRTSNANWF HSYIAVPNTT GVDLSQVSQA SPVESMMVPQ  60
SRLSHPITVD YRNGVESVEQ KSTNQSLSKA LKPKTPRKKR ATSDKSKKTP SIPETKREKK  120
NLDINIDISS FDTSGVPPPV CSCTGVSRVC YKWGMGGWQS SCCTISISTY PLPMSTTRPG  180
ARLAGRKMSN GAYVKLLVRL AGEGYNLSHP VDLKNHWARH GTNKFVTIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0993s0065.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0899610.0EU089961.1 Arabidopsis arenosa GAGA-binding transcriptional activator (BBR/BPC7) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294940.11e-169protein BASIC PENTACYSTEINE7
SwissprotO822861e-137BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLR0HUS91e-167R0HUS9_9BRAS; Uncharacterized protein
STRINGCagra.0993s0065.1.p1e-170(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136742127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.41e-139basic pentacysteine 7