PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0995s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 197aa    MW: 21318 Da    PI: 8.5077
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0995s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like802.7e-252072255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         p l+Wtp+LH+rFv+av++L G+++ +P+ti++lm+v+gLt+e+v+ HLQ YRl
  Cagra.0995s0002.1.p 20 PCLVWTPQLHKRFVDAVAHL-GIKNEVPQTIMQLMSVDGLTRENVANHLQNYRL 72
                         5689****************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-161676IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-251877IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-192272IPR006447Myb domain, plants
PfamPF002491.7E-72371IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
SADLGSGAAG DEPARTLKRP CLVWTPQLHK RFVDAVAHLG IKNEVPQTIM QLMSVDGLTR  60
ENVANHLQNY RLYLKRMQGL SSGGGAGSDP AIDRLFASSP ASAHFLHPNR VPSSDHFMPS  120
FVLVATLQQQ QQMAAAANPH LQPPQFYHRQ IAAAHIGSPT NWGFHSPTIG NYAEDLESAN  180
ANGGRTVLTL FPTRDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A8e-301975157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0995s0002.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0117081e-121AC011708.8 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence, complete sequence.
GenBankCP0026861e-121CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298091.11e-100transcription factor MYBC1
SwissprotO222101e-49MYBC1_ARATH; Transcription factor MYBC1
TrEMBLR0HX891e-139R0HX89_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0995s0002.1.p1e-144(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.12e-94G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]