PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1036s0022.2.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 360aa    MW: 40903.1 Da    PI: 7.3534
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1036s0022.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-184592148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l+ +++++G g+W++ +++ g++R++k+c++rw +yl
  Cagra.1036s0022.2.p 45 KGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLHRCGKSCRLRWTNYL 92
                         79********************************************97 PP
2Myb_DNA-binding50.74.2e-1698143148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++  +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  Cagra.1036s0022.2.p  98 RGKFNLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 143
                          899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-253694IPR009057Homeodomain-like
PROSITE profilePS5129418.7054092IPR017930Myb domain
SuperFamilySSF466891.39E-3042139IPR009057Homeodomain-like
SMARTSM007177.2E-164494IPR001005SANT/Myb domain
PfamPF002496.6E-174592IPR001005SANT/Myb domain
CDDcd001671.26E-114792No hitNo description
PROSITE profilePS5129425.2593147IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2595148IPR009057Homeodomain-like
SMARTSM007173.9E-1697145IPR001005SANT/Myb domain
PfamPF002492.9E-1598143IPR001005SANT/Myb domain
CDDcd001679.56E-11100143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MYETLQLTFL YIFIFCSVIR LVYHSLAFGR KMGRSPCCDK LGLKKGPWTP EEDQKLLAYI  60
EEHGHGSWRS LPEKAGLHRC GKSCRLRWTN YLRPDIKRGK FNLQEEQTII QLHALLGNRW  120
SAIATHLPKR TDNEIKNYWN THLKKRLVKM GIDPVTHKPK NETPLSSLGL SKNAAILSHT  180
AQWESARLEA EARLARESKL LHLQHYQTKA SSHHHHHHHG FTHKSLLTNW TTKTNEEQQQ  240
LESPTSTVSF SEMKEPIPTK IEFVGSSTGL SLLKEPENDW INSTIHEFEA TQMGEGIEEG  300
FTGLLLGGDS IERSFSGEKN ETAGESSGGD CNYYEDSKNY LDSIFNFVDP SPSDSPPMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26431475108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1036s0022.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2284740.0AK228474.1 Arabidopsis thaliana mRNA for myb-related protein - like, complete cds, clone: RAFL15-07-O19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288196.20.0transcription factor MYB16 isoform X2
SwissprotQ9LXF10.0MYB16_ARATH; Transcription factor MYB16
TrEMBLR0GW140.0R0GW14_9BRAS; Uncharacterized protein
STRINGCagra.1036s0022.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.10.0myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]