PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1036s0073.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 136aa    MW: 15187.8 Da    PI: 4.332
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1036s0073.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23.1e-181091188
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                         ff+v+   +  +s+ + +p ++ e+   + + +k  +l+ + g+ W+v +  + ++g++++++GW +Fv +n+Lk+g+f++F +dg +
  Cagra.1036s0073.1.p 10 FFSVF--LSQYSSDSFLIPSSYYEHL--PRRLPKNAILMGTGGKIWKVAM--KSQRGQVYFEEGWANFVADNELKDGEFLTFVFDGYN 91
                         66666..556667779*******555..4568889***************..99****************************987744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.12E-217103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-208102IPR015300DNA-binding pseudobarrel domain
CDDcd100174.09E-19898No hitNo description
PROSITE profilePS5086313.698101IPR003340B3 DNA binding domain
PfamPF023621.9E-151089IPR003340B3 DNA binding domain
SMARTSM010198.7E-1610101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MASGDVLPRF FSVFLSQYSS DSFLIPSSYY EHLPRRLPKN AILMGTGGKI WKVAMKSQRG  60
QVYFEEGWAN FVADNELKDG EFLTFVFDGY NHYEVSIYGH GGCKETRAAI EVEDISDDET  120
ESDNSGESFV SVTQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A6e-19910310104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1036s0073.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290106.13e-95B3 domain-containing protein At3g06220
RefseqXP_023637451.13e-95B3 domain-containing protein At3g06220
SwissprotQ1PES71e-67Y3622_ARATH; B3 domain-containing protein At3g06220
TrEMBLR0H1D47e-94R0H1D4_9BRAS; Uncharacterized protein
STRINGCagra.1036s0073.1.p1e-96(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.15e-70B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]