PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.10445s0001.2.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 375aa    MW: 41830.1 Da    PI: 7.3637
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.10445s0001.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-164388147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +g+W++e d  l ++v++ G+++W++I+r ++ gR++k+c++rw + 
  Cagra.10445s0001.2.p 43 KGPWSPEQDAALTRLVTKCGPRNWTLISRGIP-GRSGKSCRLRWCNQ 88
                          79******************************.***********985 PP
2Myb_DNA-binding48.81.6e-1595138146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +++++ eEd  +  a++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Cagra.10445s0001.2.p  95 KKPFSDEEDHMIMSAHAVHGNK-WAVIAKLLP-GRTDNAIKNHWNS 138
                           689*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.4443893IPR017930Myb domain
SuperFamilySSF466898.99E-3040136IPR009057Homeodomain-like
SMARTSM007171.1E-134291IPR001005SANT/Myb domain
PfamPF002497.7E-154388IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-234496IPR009057Homeodomain-like
CDDcd001671.29E-124587No hitNo description
SMARTSM007172.3E-1394142IPR001005SANT/Myb domain
PROSITE profilePS5129420.00994144IPR017930Myb domain
PfamPF002494.1E-1495138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2397143IPR009057Homeodomain-like
CDDcd001671.66E-997140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MPSLNLSMGC DGSEDAINAA VEEELAELEK GDSSSGGGRS KVKGPWSPEQ DAALTRLVTK  60
CGPRNWTLIS RGIPGRSGKS CRLRWCNQLD PCLKKKPFSD EEDHMIMSAH AVHGNKWAVI  120
AKLLPGRTDN AIKNHWNSSL RRKPADVWKD HQGIPSTEIY QVHPSKVRKI SNETSPREHL  180
PREEVNSFMA PVVNDDQMAN EPNEPLLEQK SKPDVYRPVA RMGAFSVCKQ GYMNHHMTPC  240
EGPLVHASRP GSLAGKFLQS LFYEPIVPSK CGRGCCNHSD NKTLCNSVLG PEFVDYEEHS  300
SAELDRELIS ISTDLNNIAW IRTGSDNKYF KEAEQSLKAD DQYHHREYAH PKFTGMVNNS  360
VSSQMLRQDL RALN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-37421433104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.10445s0001.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294397.10.0transcription factor MYB25
SwissprotO041921e-179MYB25_ARATH; Transcription factor MYB25
TrEMBLR0HPT00.0R0HPT0_9BRAS; Uncharacterized protein
STRINGCagra.10445s0001.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39880.11e-167myb domain protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]