PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1062s0030.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 187aa    MW: 21148.8 Da    PI: 9.6944
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1062s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1054.1e-332178461
               zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                          ++ cprC+s+ntkfCy+nny  sqPry Ck+Crr+Wt+GGalrnvP+Ggg+ k kk+
  Cagra.1062s0030.1.p 21 PHRVCPRCNSNNTKFCYFNNYRKSQPRYNCKNCRRHWTHGGALRNVPIGGGSHKIKKA 78
                         5678************************************************998875 PP
2zf-Dof27.18.9e-091381691445
               zf-Dof  14 tntkfCyynnyslsqPryfCkaCrryWtkGGa 45 
                          +ntkfCyyn  sls Pr   +   +y t+GG 
  Cagra.1062s0030.1.p 138 DNTKFCYYNISSLSDPRCSARIVIKYMTRGGH 169
                          79*****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-202077IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.5432377IPR003851Zinc finger, Dof-type
PfamPF027011.2E-292377IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102561IPR003851Zinc finger, Dof-type
PfamPF027011.5E-6138170IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDNLVVFGDE DTNPRNGEKP PHRVCPRCNS NNTKFCYFNN YRKSQPRYNC KNCRRHWTHG  60
GALRNVPIGG GSHKIKKARV EQPPASRGMI PLDIQQFNPQ PFPYLQESNE FVGYFGASSS  120
VAAHVGNHFG PFPDLYGDNT KFCYYNISSL SDPRCSARIV IKYMTRGGHF TTYRSVEAIV  180
NPIVQR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1062s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293054.15e-82dof zinc finger protein DOF4.5
SwissprotQ9SUA95e-45DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLR0FSX21e-80R0FSX2_9BRAS; Uncharacterized protein
STRINGCagra.1062s0030.1.p1e-138(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.12e-47Dof-type zinc finger domain-containing protein