PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1062s0034.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Dof

Protein Properties

Length: 247aa MW: 27484.3 Da PI: 8.5671

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1062s0034.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.2	4.8e-35	21	76	5	60
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + cprCds+ntkfCyynnys sqPryfCk+CrryWt+GGalr++P+Gg +r k+ Cagra.1062s0034.1.p 21 PRVCPRCDSDNTKFCYYNNYSQSQPRYFCKKCRRYWTHGGALRDIPIGGRCRTPKR 76 678*************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	16	76	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.1E-31	22	76	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.4	22	76	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	24	60	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010154	Biological Process	fruit development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MANLNVSAKE NNQVNEEKPP PRVCPRCDSD NTKFCYYNNY SQSQPRYFCK KCRRYWTHGG 60 ALRDIPIGGR CRTPKRPRIE QSSVSLMVSI ENQPGNNHQP LRHVQENNRF LGSFGGSSTS 120 SVATSIVGNQ FGYMTEVHSV SVTNVPPGRS FRPILLERLD FGEEPYQQGF YDVGTNDLIG 180 NPFINQSIGE YVGNLNSYGI NQSSFNNTMN GHHEASSSGS RGSSGTEMND DDNKKKIGSN 240 FFFRSA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1062s0034.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006282805.1	1e-162	dof zinc finger protein DOF4.4 isoform X1
Swissprot	Q9SUA9	1e-89	DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBL	R0GX21	1e-161	R0GX21_9BRAS; Uncharacterized protein
STRING	Cagra.1062s0034.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1602	17	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21050.1	2e-85	Dof-type zinc finger domain-containing protein

Link Out ? help Back to Top
Phytozome	Cagra.1062s0034.1.p