PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1062s0041.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 192aa    MW: 21761.9 Da    PI: 8.6941
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1062s0041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-091765555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                  HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                          + +E++RR +++s ++eL +llP+    +s+      + L +A +YIk+Lq
  Cagra.1062s0041.1.p 17 RKTIEKNRRMQMKSLYSELISLLPHH---SSREtSALPDQLDEAAKYIKKLQ 65
                         5789*********************7...566635567*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.4291264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-81780IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.24E-91780IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-41870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-51865IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEPSHSNTAQ SRRSVDRKTI EKNRRMQMKS LYSELISLLP HHSSRETSAL PDQLDEAAKY  60
IKKLQVNVEK KRERKRKLVA STNFEKLNSA GSSLASSSVD VSVPKRLPKI EIQEMGSILH  120
IFLVTSLEHK FVFGEIIRVL TEELEAEITH AGYSIVDDAV FHTLHCKVEE CDYGARSQIP  180
ERLEKFVNSV N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16877EKKRERKRKL
27077KRERKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1062s0041.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936861e-170AB493686.1 Arabidopsis thaliana At4g20970 mRNA for hypothetical protein, partial cds, clone: RAAt4g20970.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284564.21e-126transcription factor bHLH162 isoform X1
SwissprotF4JIJ71e-106BH162_ARATH; Transcription factor bHLH162
TrEMBLR0F6L91e-125R0F6L9_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1062s0041.1.p1e-138(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-100bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]