PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.10637s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 229aa    MW: 26061.1 Da    PI: 9.7597
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.10637s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.7e-183277148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
  Cagra.10637s0001.1.p 32 RGKMTPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 77
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-101238IPR009057Homeodomain-like
PROSITE profilePS500904.4261226IPR017877Myb-like domain
SuperFamilySSF466891.55E-221282IPR009057Homeodomain-like
PROSITE profilePS5129427.8142781IPR017930Myb domain
SMARTSM007172.2E-173179IPR001005SANT/Myb domain
PfamPF002492.4E-163276IPR001005SANT/Myb domain
CDDcd001675.63E-133477No hitNo description
Gene3DG3DSA:1.10.10.606.5E-213978IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDRTGGHTSG LNRTGKSCRL RWVNYLHPGL KRGKMTPQEE RLVLELHAKW GNRWSKIARK  60
LPGRTDNEIK NYWRTHMRKK AQEKKRPMSP TSSFSNCSSS SMTTTTTNTQ DTSCHSRKSS  120
GKVSFYDTGG SRSTGDIMMN QETEDVYSMD DIWREIDHSP VNIIKPVKDI YSEHSHCLSY  180
STLASPTWES SLDSIWNMDG DKSKMSSSFG NDQFPFCFQH SRSPWSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-1878133105MYB PROTO-ONCOGENE PROTEIN
1h88_C8e-1878187159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-1878187159MYB PROTO-ONCOGENE PROTEIN
1h8a_C5e-18138160128MYB TRANSFORMING PROTEIN
1mse_C3e-1878133105C-Myb DNA-Binding Domain
1msf_C3e-1878133105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.10637s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0752560.0DQ075256.1 Arabidopsis thaliana MYB transcription factor MYB48-2 (At3g46130) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291710.11e-162transcription factor MYB48 isoform X2
SwissprotQ9LX821e-132MYB48_ARATH; Transcription factor MYB48
TrEMBLR0HL371e-160R0HL37_9BRAS; Uncharacterized protein
STRINGCagra.10637s0001.1.p1e-170(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25022774
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.31e-132myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]