PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.10637s0001.2.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB_related

Protein Properties

Length: 195aa MW: 22225.6 Da PI: 8.3326

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.10637s0001.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	8.9e-17	2	43	5	48
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ Cagra.10637s0001.2.p 2 TPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 43 9***************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.772	1	47	IPR017930	Myb domain
SMART	SM00717	3.1E-12	1	45	IPR001005	SANT/Myb domain
CDD	cd00167	9.02E-13	1	43	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-20	2	44	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.54E-13	2	48	IPR009057	Homeodomain-like
Pfam	PF00249	4.4E-15	2	42	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MTPQEERLVL ELHAKWGNRW SKIARKLPGR TDNEIKNYWR THMRKKAQEK KRPMSPTSSF 60 SNCSSSSMTT TTTNTQDTSC HSRKSSGKVS FYDTGGSRST GDIMMNQETE DVYSMDDIWR 120 EIDHSPVNII KPVKDIYSEH SHCLSYSTLA SPTWESSLDS IWNMDGDKSK MSSSFGNDQF 180 PFCFQHSRSP WSSG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.10637s0001.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF272733	0.0	AF272733.1 Arabidopsis thaliana putative transcription factor (MYB48) mRNA, complete cds.
GenBank	AK176475	0.0	AK176475.1 Arabidopsis thaliana mRNA for Myb DNA binding protein -like, complete cds, clone: RAFL24-27-H12.
GenBank	AY519594	0.0	AY519594.1 Arabidopsis thaliana MYB transcription factor (At3g46130) mRNA, complete cds.
GenBank	DQ075255	0.0	DQ075255.1 Arabidopsis thaliana MYB transcription factor MYB48-1 (At3g46130) mRNA, complete cds, alternatively spliced.
GenBank	DQ075256	0.0	DQ075256.1 Arabidopsis thaliana MYB transcription factor MYB48-2 (At3g46130) mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023638844.1	1e-142	transcription factor MYB48 isoform X1
Swissprot	Q9LX82	1e-110	MYB48_ARATH; Transcription factor MYB48
TrEMBL	R0HL37	1e-139	R0HL37_9BRAS; Uncharacterized protein
STRING	Cagra.10637s0001.1.p	1e-142	(Capsella grandiflora)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46130.2	1e-106	myb domain protein 48

Link Out ? help Back to Top
Phytozome	Cagra.10637s0001.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nishida S,Kakei Y,Shimada Y,Fujiwara T Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana. Plant J., 2017. 91(4): p. 741-753 [PMID:28586097] Imran QM, et al. Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes. Sci Rep, 2018. 8(1): p. 771 [PMID:29335449]