PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1085s0086.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 226aa    MW: 25098.8 Da    PI: 6.5133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1085s0086.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-08134174954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Cagra.1085s0086.1.p 134 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 174
                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.091125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-14130183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-12131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-6135174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.73E-6148179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNNNNNNVNP SLFQSYTWNN IINSSNNNNK NDHHHHNDPI GMVMDQHTHL HIFNNPFSSS  60
HFTPLSSSLA TTTLFSGDQA DEEDEEEPLE ELGAMKEMMY KIAAMQPVDI DPASVKKPKR  120
RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL  180
LNNNPGNHPP PPQDQASQAV TTSWVSPPNF GGGEGGGGGG GEELI*
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1085s0086.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545970.0AC254597.1 Capsella rubella clone CAP08-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290209.21e-163transcription factor HEC3, partial
SwissprotQ9LXD81e-89HEC3_ARATH; Transcription factor HEC3
TrEMBLR0FKX91e-160R0FKX9_9BRAS; Uncharacterized protein
STRINGCagra.1085s0086.1.p1e-167(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44492754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.18e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]