PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1103s0007.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 222aa MW: 25071.3 Da PI: 7.1432

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1103s0007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.3	2e-11	146	186	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ +L++l+P+ +K++ +++Le Av+Y+k Lq Cagra.1103s0007.1.p 146 RKRRERINDRLKTLQSLVPNG-----TKVDISTMLEDAVHYVKFLQ 186 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.831	136	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-14	141	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-12	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-12	142	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.72E-12	145	190	No hit	No description
Pfam	PF00010	7.5E-9	146	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MENEAFVVDG ELESLLGIFN FDQCSSNESI SYNAPHSETD AYSSDDFFPF GTILQRNYPA 60 VLDGSNYQTN LYVDSRQELM KPRKKQKLSS ESILVVAEPK TTWRDVHTPS SYNCSDDEKT 120 NTSKSIKGKA KSKKGIASDP QSLYARKRRE RINDRLKTLQ SLVPNGTKVD ISTMLEDAVH 180 YVKFLQLQIK LLSSDDLWMY APLAHNGLNM GLHHNLLSRL M*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1103s0007.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB023030	9e-58	AB023030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24F5.
GenBank	CP002688	9e-58	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006282332.1	1e-150	transcription factor bHLH139
Swissprot	Q3E7L7	1e-130	BH139_ARATH; Transcription factor bHLH139
TrEMBL	R0GSB0	1e-149	R0GSB0_9BRAS; Uncharacterized protein
STRING	Cagra.1103s0007.1.p	1e-165	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4132	22	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43175.1	1e-107	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cagra.1103s0007.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]