PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1111s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family BBR-BPC
Protein Properties Length: 287aa    MW: 32252.8 Da    PI: 10.3805
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1111s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind314.33.9e-9622861301
            GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki.....rernlalsekkaav............aerd........maflqrdk 65 
                          m +dg  +rn+gyyep+ +++ nlg+ql+ si +r +k+     +++n ++ ++ +++             +rd        m++    +
  Cagra.1111s0005.1.p   2 MGEDGLSNRNWGYYEPS-QFRPNLGFQLIPSIINRSEKPfvdspQNQNPNFVTPTNVYrgggstssslmsFPRDytvsdapfMSY----S 86 
                          88999***********9.************************9999999999999999555554444444333355555444444....5 PP

            GAGA_bind  66 alaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqr 155
                          +l++      +rd+k+++++++  +   ++ +g                    l ++a  +++  +l +++++ +++e+ ++++ + +qr
  Cagra.1111s0005.1.p  87 WLNQ------HRDSKFFSNVPNPSN---HHHTGL-------------------LVPEASRMTQPMQLLQPEVVGEVDESLKRRQYNVGQR 148
                          6666......777777777774333...222333...................3334444444444677888899999999999998877 PP

            GAGA_bind 156 akkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPL 244
                          +  pk+kk+kk k+        +++++++ +rs   +ksi++v+ngvs+D++++PvPvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPL
  Cagra.1111s0005.1.p 149 G-APKVKKEKKLKD--------NNMPRVQrTRSPLLRKSIEMVINGVSMDIGGIPVPVCSCTGMPQQCYRWGCGGWQSACCTTNVSMYPL 229
                          6.699999999998........345555547899******************************************************** PP

            GAGA_bind 245 PvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          P+stkrrgaRiagrKmSqgaf+k+LekL+++G+d+s p+DLk+hWAkHGtnkfvtir
  Cagra.1111s0005.1.p 230 PMSTKRRGARIAGRKMSQGAFRKVLEKLSTDGFDFSVPIDLKSHWAKHGTNKFVTIR 286
                          ********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.2E-1462286IPR010409GAGA-binding transcriptional activator
PfamPF062171.2E-834286IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MMGEDGLSNR NWGYYEPSQF RPNLGFQLIP SIINRSEKPF VDSPQNQNPN FVTPTNVYRG  60
GGSTSSSLMS FPRDYTVSDA PFMSYSWLNQ HRDSKFFSNV PNPSNHHHTG LLVPEASRMT  120
QPMQLLQPEV VGEVDESLKR RQYNVGQRGA PKVKKEKKLK DNNMPRVQRT RSPLLRKSIE  180
MVINGVSMDI GGIPVPVCSC TGMPQQCYRW GCGGWQSACC TTNVSMYPLP MSTKRRGARI  240
AGRKMSQGAF RKVLEKLSTD GFDFSVPIDL KSHWAKHGTN KFVTIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1111s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0125631e-161AC012563.7 Arabidopsis thaliana chromosome 1 BAC T23K23 genomic sequence, complete sequence.
GenBankBT0221171e-161BT022117.1 Arabidopsis thaliana At1g68120 mRNA, complete cds.
GenBankCP0026841e-161CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301584.10.0protein BASIC PENTACYSTEINE3
RefseqXP_023643123.10.0protein BASIC PENTACYSTEINE3
SwissprotQ9C9X61e-163BPC3_ARATH; Protein BASIC PENTACYSTEINE3
TrEMBLR0GFA20.0R0GFA2_9BRAS; Uncharacterized protein
STRINGCagra.1111s0005.1.p0.0(Capsella grandiflora)
STRINGXP_006301584.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153471518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68120.11e-165basic pentacysteine 3