PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.11446s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 624aa    MW: 70890.7 Da    PI: 6.694
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.11446s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.49.7e-5661341129
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           +ppGfrFhPtdeelv +yLk+k++g+++el e+i+e+d+yk+ePwdLp k  + +++ ew+fFs+rd+ky++g+r+nratk+gyWkatg
  Cagra.11446s0003.1.p   6 MPPGFRFHPTDEELVIYYLKRKINGRTIEL-EIIPEIDLYKCEPWDLPgKsLLPSKDLEWFFFSPRDRKYPNGSRTNRATKAGYWKATG 93 
                           79****************************.99***************6434555777******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                           kd++v+s ++++vg+kktLv+y+grap+g++tdWvmheyrle
  Cagra.11446s0003.1.p  94 KDRKVTS-HSRTVGTKKTLVYYRGRAPHGSRTDWVMHEYRLE 134
                           *******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-644156IPR003441NAC domain
PROSITE profilePS5100561.0076156IPR003441NAC domain
PfamPF023652.3E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MAPVSMPPGF RFHPTDEELV IYYLKRKING RTIELEIIPE IDLYKCEPWD LPGKSLLPSK  60
DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVTS HSRTVGTKKT LVYYRGRAPH  120
GSRTDWVMHE YRLEEQECES KSGIQDAYAL CRVFKKSGLA NKIEEQQNHV MKNKGTTNSE  180
QSTSSTCLYS DGMYENIENS EYPISPDTGG GLTQLGNISS SSDMETMENK WSQFMSHDTS  240
FNFPAQSQYG TISYPPTKVE IELECARLQN RMLPTVPPLY VEDLTHGEYL GNNVANDTDE  300
MLSKIIALAQ SSHEPRNSLD SWDGGSASGN FNGDFNYSRD NIACVQANMK AIDMQEHYGR  360
FKEERLVENL RWVGVSSKEL EKSFIEEHST VVPIEDIWSY HRDTQIHQNQ DLMDVNNNNG  420
DVDDAFTLEF SENEHNENLL DKNDHDTTSS PRFDVVKKVE VSHGLFVTTR QVTNTFFQQI  480
VPSQTVIVYI NPTGSNGCCH NMTSKEEVHV GKKIVKPRTN GVVSTILGPW RKLAYVFGFI  540
PMLLLCVHQR GNSNKNQSSE CYSRRSKKGD CNNPGTILMM ENDVVRRKIW KKENGLRVQD  600
SFLLKRLGLS LAIILAVSTI SLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-57116212171NO APICAL MERISTEM PROTEIN
1ut4_B9e-57116212171NO APICAL MERISTEM PROTEIN
1ut7_A9e-57116212171NO APICAL MERISTEM PROTEIN
1ut7_B9e-57116212171NO APICAL MERISTEM PROTEIN
3swm_A1e-56116215174NAC domain-containing protein 19
3swm_B1e-56116215174NAC domain-containing protein 19
3swm_C1e-56116215174NAC domain-containing protein 19
3swm_D1e-56116215174NAC domain-containing protein 19
3swp_A1e-56116215174NAC domain-containing protein 19
3swp_B1e-56116215174NAC domain-containing protein 19
3swp_C1e-56116215174NAC domain-containing protein 19
3swp_D1e-56116215174NAC domain-containing protein 19
4dul_A9e-57116212171NAC domain-containing protein 19
4dul_B9e-57116212171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.11446s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026841e-133CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF12P191e-133AC009513.2 Sequence of BAC F12P19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301376.10.0NAC domain-containing protein 86
TrEMBLR0HWP30.0R0HWP3_9BRAS; Uncharacterized protein
STRINGCagra.11446s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.10.0NAC domain containing protein 28