PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1157s0012.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 127aa    MW: 14697.7 Da    PI: 10.5146
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1157s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.41.8e-1446102359
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                          + ++ rrk +NRe+ArrsR RK+  ++eL     +L +eNk+L +el+  k+ ++k+
  Cagra.1157s0012.1.p  46 DERKRRRKVSNRESARRSRMRKRRHMDELWSMLVQLINENKTLVDELSGVKEGYEKV 102
                          5578899*********************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.7E-1238101No hitNo description
SMARTSM003383.8E-1544108IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.01346109IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.59E-114897No hitNo description
PfamPF001706.1E-1248105IPR004827Basic-leucine zipper domain
PROSITE patternPS0003605166IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MAGFVYNNLP SANPNPQSLF QTFVDRVPLS NLPATSDKSS RSAEDDERKR RRKVSNRESA  60
RRSRMRKRRH MDELWSMLVQ LINENKTLVD ELSGVKEGYE KVIEENTKLR EENSKFRKMI  120
GEIGLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14751RKRRR
25068RRKVSNRESARRSRMRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1157s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301639.11e-85basic leucine zipper 8
SwissprotQ9CA468e-72BZIP8_ARATH; Basic leucine zipper 8
TrEMBLR0GFF52e-84R0GFF5_9BRAS; Uncharacterized protein
STRINGCagra.1157s0012.1.p4e-87(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150351619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68880.12e-62basic leucine-zipper 8
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]