PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1158s0007.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 406aa    MW: 45824.9 Da    PI: 5.4922
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1158s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.78.7e-134454054374
                 GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          +L++cA+avs+++l +a++++ +l+ ++s +g p+qRl ay++e+L arla s+s++yk+l+++e +   s e l+++ +++ev+P+lkf
  Cagra.1158s0007.1.p  45 VLVACAKAVSENNLLMARWCMGELRGMVSISGAPIQRLGAYMLEGLVARLAASGSSIYKSLQSREPE---SYEFLSYVYVLHEVCPYLKF 131
                          79****************************************************************9...9******************* PP

                 GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                          +++ aN aI ea++ eer+HiiDf+++qG QW++L+qa+a+Rp+g+p+++iTg+g+        l ++++rL+k+A++++vpf+fn+ ++
  Cagra.1158s0007.1.p 132 GYMSANGAIAEAMKDEERIHIIDFQVGQGSQWISLIQAFAARPGGAPNIQITGIGD-----VPVLVTVKRRLEKLAKKFDVPFKFNA-IS 215
                          ********************************************************.....99************************.79 PP

                 GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                          +   ++e+e+L+v++gEal Vn++++lh+l+desvs+e++rd++L++vkslsPkvv++veqe+++n+++F+ rfle+l+yy+a+f+s+++
  Cagra.1158s0007.1.p 216 RPSYEVEVENLDVREGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFFPRFLETLSYYTAMFESIDV 305
                          9***************************************************************************************** PP

                 GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                           lpr+++eri++E+++l+r++vn++acegaer+erhe l+kW++r+++aGF+p+pls+ + +++++l+r ++++ y +ee++g+l+lgW+
  Cagra.1158s0007.1.p 306 MLPRNHKERINIEQHCLARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISTTIRALMRDYSNR-YVIEESDGALYLGWM 394
                          ************************************************************************77.*************** PP

                 GRAS 364 drpLvsvSaWr 374
                          dr Lvs +aW+
  Cagra.1158s0007.1.p 395 DRILVSSCAWK 405
                          **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.36616386IPR005202Transcription factor GRAS
PfamPF035143.0E-13145405IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MLQPLPEIAE SINDAICHEL SMWPEDANDL LLIVEAISRG DLKWVLVACA KAVSENNLLM  60
ARWCMGELRG MVSISGAPIQ RLGAYMLEGL VARLAASGSS IYKSLQSREP ESYEFLSYVY  120
VLHEVCPYLK FGYMSANGAI AEAMKDEERI HIIDFQVGQG SQWISLIQAF AARPGGAPNI  180
QITGIGDVPV LVTVKRRLEK LAKKFDVPFK FNAISRPSYE VEVENLDVRE GEALGVNFAY  240
MLHHLPDESV SMENHRDRLL RMVKSLSPKV VTLVEQECNT NTSPFFPRFL ETLSYYTAMF  300
ESIDVMLPRN HKERINIEQH CLARDVVNII ACEGAERIER HELLGKWKSR FSMAGFEPYP  360
LSSIISTTIR ALMRDYSNRY VIEESDGALY LGWMDRILVS SCAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-62464058375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1158s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069550.0AC006955.6 Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete sequence.
GenBankAC0072110.0AC007211.6 Arabidopsis thaliana chromosome 2 BAC F1O13 genomic sequence, complete sequence.
GenBankAF2107320.0AF210732.1 Arabidopsis thaliana scarecrow-like 21 (SCL21) mRNA, complete cds.
GenBankAK1752100.0AK175210.1 Arabidopsis thaliana mRNA for putative SCARECROW gene regulator, complete cds, clone: RAFL21-63-H23.
GenBankBT0264550.0BT026455.1 Arabidopsis thaliana At2g04890 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299515.10.0scarecrow-like protein 21
SwissprotQ9S7H50.0SCL21_ARATH; Scarecrow-like protein 21
TrEMBLR0I7H60.0R0I7H6_9BRAS; Uncharacterized protein
STRINGCagra.1158s0007.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.10.0SCARECROW-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]