PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.11786s0007.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 102aa    MW: 11631.4 Da    PI: 10.102
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.11786s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.8e-13896289
                          EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3  2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                          +k+lt sdv++++rl+lpkk +e++       ++++++++ + d ++  W v++     +++y++++GW +  +a++L++gD++ ++ ++ 
  Cagra.11786s0007.1.p  8 EKKLTDSDVSNKARLRLPKKKVENIirstgVPIPRNGIQVEILDNNNSYW-VNF--GVDGSGYFIGSGWINLRDAKHLRTGDIIKLYWEN- 94
                          79********************998**99855567889999999766666.556..556667***********************99433. PP

                          SE CS
                    B3 88 se 89
                          ++
  Cagra.11786s0007.1.p 95 TK 96
                          44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.0E-13295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-15396IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-12699No hitNo description
SMARTSM010191.9E-77101IPR003340B3 DNA binding domain
PfamPF023623.2E-10897IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MDPNMMIEKK LTDSDVSNKA RLRLPKKKVE NIIRSTGVPI PRNGIQVEIL DNNNSYWVNF  60
GVDGSGYFIG SGWINLRDAK HLRTGDIIKL YWENTKFIFS M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.11786s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289390.16e-67B3 domain-containing protein At1g08985
SwissprotQ8GWU17e-47Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBLR0HES11e-65R0HES1_9BRAS; Uncharacterized protein
STRINGCagra.11786s0007.1.p2e-68(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.13e-49B3 family protein