PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1225s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 418aa    MW: 47347.7 Da    PI: 7.0814
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1225s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.6e-14227274355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++hn  ErrRR++iN+++ +L+el+P +     +K +Ka++L  ++eY+k Lq
  Cagra.1225s0008.1.p 227 EMHNLSERRRREKINERMKTLQELIPRC-----RKSDKASMLDDVIEYLKVLQ 274
                          58*************************9.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.803224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-12227274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-20227301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.60E-15227278No hitNo description
Gene3DG3DSA:4.10.280.109.6E-20228284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MYNEQETKVE NYKLQKESTR RVTTSLWNAE NVIIFDVKVC LRYRGEDDLV ELLWKSGQVV  60
RSSQTQRPSS DEPSPPPPPP PILRGSGSGG GGEENASLPL PHLQPQPHMH QQNLFIQEDE  120
MASWLHHSYR QDYFSSELLY PQSSVSLAPT PSALYTLPPE RPTDPIQVQP ATETEKLKER  180
EETIAGIQVN LRTHVDPSRL NLSMFRGVQR TEEARGSASR KRSRAAEMHN LSERRRREKI  240
NERMKTLQEL IPRCRKSDKA SMLDDVIEYL KVLQSQVQMM STGQGMMPPM MYAGNMQQFM  300
PQMGMGMMGM NQPPPFIPFN RPPHIPGLGP QYPAPRYPFP NIQTSDPSIV HLPTPQPNMV  360
SNQPQFPVYM NPNSQFPGLH QMQQLPPPLQ SQTTSQMSIS QASTSKELED QDNQPTG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219236RKRSRAAEMHNLSERRRR
2232237ERRRRE
3233238RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1225s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775862e-57AJ577586.1 Arabidopsis thaliana mRNA for putative bHLH127 transcription factor (bHLH127 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634848.11e-150putative transcription factor bHLH056 isoform X2
SwissprotQ9SVU71e-114BH056_ARATH; Putative transcription factor bHLH056
TrEMBLR0GU451e-148R0GU45_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1225s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.16e-49bHLH family protein