PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1226s0091.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 354aa    MW: 38338.1 Da    PI: 10.2093
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1226s0091.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30284342259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+Hnh 
  Cagra.1226s0091.1.p 284 SDEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDAMMLIVTYEGDHNHA 342
                          69*************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.8E-16248281IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-32271342IPR003657WRKY domain
PROSITE profilePS5081129.872278344IPR003657WRKY domain
SuperFamilySSF1182901.44E-25281342IPR003657WRKY domain
SMARTSM007745.9E-37283343IPR003657WRKY domain
PfamPF031065.8E-26285341IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAVELMMSSS SYGGGKGDGF PAISASVKME DTALREAASA GIHGVEEFLK LIGQTQSQPT  60
EKSQTEITAV TDVAVNSFKK VISLLGRSRT GHARFRRAPT TTATQTPFIK QTAVEEEEAE  120
EKKPETTAVF AKQKTEQYHA GGSAFRVYCP TPIHRRPPLS HSNQNQATKN GSSSSSPPIL  180
ANGAPSTINF APSPPVSATN SFMSSHSHRC DTADTSHMSS GFEFTNPSHV SGSRGKPPLS  240
SASLKRRCNS SPSSRCHCSK KRKSRVKRVI RVPAVSSKMA DIPSDEFSWR KYGQKPIKGS  300
PHPRGYYKCS SVRGCPARKH VERALDDAMM LIVTYEGDHN HALVLETHHD KTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21271343273WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244262KRRCNSSPSSRCHCSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1226s0091.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284025.10.0probable WRKY transcription factor 7
SwissprotQ9STX00.0WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLR0H0E10.0R0H0E1_9BRAS; Uncharacterized protein
STRINGCagra.1226s0091.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-171WRKY DNA-binding protein 7