PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.12398s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 181aa    MW: 20391.1 Da    PI: 7.8835
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.12398s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.41e-141564150
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          krie +  r vt+skR+ngi  K  ELSvLC+++ a++ +  +gk y++ 
  Cagra.12398s0004.1.p 15 KRIEREEERLVTLSKRKNGIYTKLCELSVLCGVNTALLGYTGSGKPYTFG 64
                          79**********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-17766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.801767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-20877IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-14929IPR002100Transcription factor, MADS-box
PfamPF003192.3E-151663IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MNSKKTKGKQ KIKIKRIERE EERLVTLSKR KNGIYTKLCE LSVLCGVNTA LLGYTGSGKP  60
YTFGSPSFKA ISEQFLNGEA SSSSSLQRSD DADYKVKIQE LCELYNNIVE QTRAEEAKAT  120
KAAASVEPLP EDVWWKVPLV EMKDQEEKKQ LLEKFEGLYE KLCDELTARN QSQDTAENNK  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.12398s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305697.11e-108agamous-like MADS-box protein AGL29
TrEMBLR0IJE01e-106R0IJE0_9BRAS; Uncharacterized protein
STRINGCagra.12398s0004.1.p1e-129(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.13e-47AGAMOUS-like 64