PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.12516s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 260aa    MW: 29469.3 Da    PI: 10.4411
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.12516s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-153375447
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          WT+ Ed++l ++v+ +G ++W++I ++m+ +R++k+c+ rw++ 
  Cagra.12516s0001.1.p 33 WTESEDLKLTELVAAHGFDNWDLIGEKMQ-TRSGKSCRVRWFNQ 75
                          *****************************.***********996 PP
2Myb_DNA-binding45.91.3e-1483127248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            ++T+eE+ ++v  ++ +G+  W +Iar++  gRt+++++++w+ +l
  Cagra.12516s0001.1.p  83 APFTEEEERIIVSSHNYYGNQ-WVKIARHLK-GRTENDVRHHWNYHL 127
                           68*****************99.********9.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.512376IPR017930Myb domain
SMARTSM007177.7E-132978IPR001005SANT/Myb domain
SuperFamilySSF466891.03E-2631123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-233283IPR009057Homeodomain-like
PfamPF002492.3E-153275IPR001005SANT/Myb domain
CDDcd001678.21E-143374No hitNo description
PROSITE profilePS5129421.86877131IPR017930Myb domain
SMARTSM007174.6E-1481129IPR001005SANT/Myb domain
PfamPF002495.8E-1383127IPR001005SANT/Myb domain
CDDcd001675.14E-1284127No hitNo description
Gene3DG3DSA:1.10.10.603.5E-1984129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
RPVNGVGANN ALPSTETQQE KRKMSSRGGL RHWTESEDLK LTELVAAHGF DNWDLIGEKM  60
QTRSGKSCRV RWFNQLDPTI NRAPFTEEEE RIIVSSHNYY GNQWVKIARH LKGRTENDVR  120
HHWNYHLNRP ARGSHIKPKT RYFTPPMNPH GYPGYEGIRI RKNCSSNEER TNLYAHPRMP  180
VQLSGQRTNL CPNPRMPVQL SGQRTNLCAY PRMPVQLSGG SLAPSTQLFA PSPSPSPEAA  240
NAMMRRTPKF IDFLGVGDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-263313110108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.12516s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023635363.10.0transcription factor CSA
SwissprotQ9SEZ42e-36MY105_ARATH; Transcription factor MYB105
TrEMBLR0FBF81e-109R0FBF8_9BRAS; Uncharacterized protein
STRINGCagra.12516s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17330310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39700.13e-45myb domain protein 89
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]