PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.12529s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 566aa    MW: 62338 Da    PI: 4.6692
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.12529s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.23.4e-3661333128
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                            G rF+Pt eel+++yLk+k  gk+  ++e+i e++i+++ P+ Lp  + +++++ ewyfFs+   +++++k+ +r+t sgyWk+tgk+
  Cagra.12529s0001.1.p   6 IGSRFSPTGEELINDYLKNKNLGKTWLVHEAIGEINILSYIPKLLPdlAVIRSKDPEWYFFSPIVYTNSKKKEMKRITGSGYWKTTGKN 94 
                           699**********************999999**************96447788888********************************* PP

                   NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           + + +k+  ++glkktL++y+g+ p+g+ t Wvmhey++
  Cagra.12529s0001.1.p  95 RIIRDKSCVEIGLKKTLMYYTGKVPNGVWTPWVMHEYHI 133
                           *****9999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.1134151IPR003441NAC domain
SuperFamilySSF1019411.83E-395151IPR003441NAC domain
PfamPF023651.7E-207133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0031965Cellular Componentnuclear membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MVKDLIGSRF SPTGEELIND YLKNKNLGKT WLVHEAIGEI NILSYIPKLL PDLAVIRSKD  60
PEWYFFSPIV YTNSKKKEMK RITGSGYWKT TGKNRIIRDK SCVEIGLKKT LMYYTGKVPN  120
GVWTPWVMHE YHITSLPHLQ INYVICQVKY KGKAKDISYG NNLTESSHSL DFDSNTAIAM  180
NSAPEPADSY VICNVCGKGG KEVVNISNGD SSSEPSPPSL VSDSNTIRLT SIIPPVFQVE  240
QPCQGSLYGL SENDLILPMN EQMGGSDPNS INNSPYVQLQ APFSLQENDE LLSGLPQNLT  300
HTSYGNNMTE PSHSLVFDSN TAMASNRAPE PAIQVEQASG NNFVGMSLDD LIDPNEDLSE  360
WDEHYDTETF FSDETNNTNT SLQPQAPHLS PSDNEFIDGL MHVCQRQVKD LFTLSMTENR  420
NNHTATKPLS GTIPDYSSDS DSDAESISAT SYPSTSSPVG SSNGCLSSCS STDSCNDLQP  480
SAESSTGEYQ LIQRTVPSKQ EVKQETPKVI DVSIKKTKKK GWFITEEAME RNGMTPLFIY  540
LMMIGLILLL ALIGIIISAL LNVKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-23713320142NO APICAL MERISTEM PROTEIN
1ut4_B3e-23713320142NO APICAL MERISTEM PROTEIN
1ut7_A3e-23713320142NO APICAL MERISTEM PROTEIN
1ut7_B3e-23713320142NO APICAL MERISTEM PROTEIN
3swm_A3e-23713323145NAC domain-containing protein 19
3swm_B3e-23713323145NAC domain-containing protein 19
3swm_C3e-23713323145NAC domain-containing protein 19
3swm_D3e-23713323145NAC domain-containing protein 19
3swp_A3e-23713323145NAC domain-containing protein 19
3swp_B3e-23713323145NAC domain-containing protein 19
3swp_C3e-23713323145NAC domain-containing protein 19
3swp_D3e-23713323145NAC domain-containing protein 19
4dul_A3e-23713320142NAC domain-containing protein 19
4dul_B3e-23713320142NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00425DAPTransfer from AT4G01540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.12529s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637094.10.0NAC domain-containing protein 69 isoform X1
TrEMBLR0H9B70.0R0H9B7_9BRAS; Uncharacterized protein
STRINGCagra.12529s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3353022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01540.11e-89NAC with transmembrane motif1