PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1261s0013.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 183aa    MW: 19727.3 Da    PI: 7.0831
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1261s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.45.7e-39111121101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++C++apyf +e+ +++fa+vhk+FGasn +kll  +p ++r da+ +l yeA ar+rdPvyG+vg+i++lq+q+++
  Cagra.1261s0013.1.p  11 PCGACKFLRRKCVSECIFAPYFDSEEgTSHFAAVHKVFGASNASKLLMMIPASRRLDAVVTLSYEALARLRDPVYGCVGHIFALQHQVMN 100
                          7*********************998879************************************************************** PP

               DUF260  90 lkaelallkeel 101
                          l+aela+++++l
  Cagra.1261s0013.1.p 101 LQAELAYVQTQL 112
                          ********9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.71610112IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-3811109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSGGTNGGGG PCGACKFLRR KCVSECIFAP YFDSEEGTSH FAAVHKVFGA SNASKLLMMI  60
PASRRLDAVV TLSYEALARL RDPVYGCVGH IFALQHQVMN LQAELAYVQT QLTSLQRLLP  120
PNPQNNSQTE VASSFNAPLI ASSGDNKSNV LSSSPSHIHC MPQQQQQGKE DIEVSRESVD  180
LST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3951125111LOB family transfactor Ramosa2.1
5ly0_B2e-3951125111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1261s0013.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289084.11e-128LOB domain-containing protein 31
SwissprotO813222e-95LBD31_ARATH; LOB domain-containing protein 31
TrEMBLR0FHZ71e-127R0FHZ7_9BRAS; Uncharacterized protein
STRINGCagra.1261s0013.1.p1e-134(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-89LOB domain-containing protein 31