PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.13025s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 178aa    MW: 20528.6 Da    PI: 9.16
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.13025s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind38.33.6e-1218103199
                           HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
          HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                           +Fl+k y +++d+ ++++isw  ng+sf+v++  e  +++Lp+    s f  F  QL   gFkkv + +          e++ + F kg
  Cagra.13025s0006.1.p  18 EFLSKAYAMVDDPWTDSIISWGFNGDSFIVWNLPECRRDLLPRLLGISDFGKF--QL--HGFKKVASAH---------LEYARDDFVKG 93 
                           69*********************************************999999..66..5******999.........78********* PP

                           XXXXXXXXXX CS
          HSF_DNA-bind  90 kkellekikr 99 
                           + elleki +
  Cagra.13025s0006.1.p  94 RPELLEKIAQ 103
                           *******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-161198IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-1715104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-1516101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.8E-1219103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MTDHGAAVSV AKKKECLEFL SKAYAMVDDP WTDSIISWGF NGDSFIVWNL PECRRDLLPR  60
LLGISDFGKF QLHGFKKVAS AHLEYARDDF VKGRPELLEK IAQSFYDKRE KKMKPLRDAL  120
RNCKEGEDLK VTKEWLASQE RERRDQVDKD LLKNADLLLL SISREKERRA HALATFK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.13025s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285897.11e-112heat stress transcription factor A-4a isoform X2
TrEMBLR0H2A21e-111R0H2A2_9BRAS; Uncharacterized protein
STRINGCagra.13025s0006.1.p1e-127(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142121123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.12e-20heat shock factor 1